Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 646818..647089 | Replicon | chromosome |
| Accession | NZ_CP075665 | ||
| Organism | Escherichia coli strain STEC2018-553 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 646948..647051 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 646818..647089 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY30_RS03095 | 643373..644035 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JFY30_RS03100 | 644059..644715 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFY30_RS03105 | 644817..645047 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFY30_RS03110 | 645186..645560 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFY30_RS03115 | 645564..646436 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| JFY30_RS03120 | 646449..646790 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 646818..647089 | - | 272 | - | - | Antitoxin |
| - | 646948..647051 | + | 104 | - | - | Toxin |
| JFY30_RS03125 | 647186..647842 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JFY30_RS03130 | 647843..648034 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JFY30_RS03135 | 648139..648375 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JFY30_RS03140 | 648493..649932 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204182 NZ_CP075665:646948-647051 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204182 NZ_CP075665:c647089-646818 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
