Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1197287..1198122 | Replicon | chromosome |
| Accession | NZ_CP075663 | ||
| Organism | Escherichia coli strain STEC2017-197 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | JFX55_RS06180 | Protein ID | WP_062871540.1 |
| Coordinates | 1197287..1197664 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A0E1LVG0 |
| Locus tag | JFX55_RS06185 | Protein ID | WP_001285484.1 |
| Coordinates | 1197754..1198122 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX55_RS06140 (1192295) | 1192295..1192786 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| JFX55_RS06145 (1192888) | 1192888..1193442 | - | 555 | WP_001001902.1 | molecular chaperone YcdY | - |
| JFX55_RS06150 (1193466) | 1193466..1194203 | - | 738 | WP_000283664.1 | zinc-binding phosphatase | - |
| JFX55_RS06155 (1194258) | 1194258..1195195 | - | 938 | Protein_1212 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| JFX55_RS06165 (1195666) | 1195666..1196508 | - | 843 | WP_001280423.1 | DUF4942 domain-containing protein | - |
| JFX55_RS06170 (1196593) | 1196593..1196790 | - | 198 | WP_000839242.1 | DUF957 domain-containing protein | - |
| JFX55_RS06175 (1196802) | 1196802..1197290 | - | 489 | WP_198790226.1 | DUF5983 family protein | - |
| JFX55_RS06180 (1197287) | 1197287..1197664 | - | 378 | WP_062871540.1 | TA system toxin CbtA family protein | Toxin |
| JFX55_RS06185 (1197754) | 1197754..1198122 | - | 369 | WP_001285484.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| JFX55_RS06190 (1198172) | 1198172..1198816 | - | 645 | WP_198790225.1 | antitoxin of toxin-antitoxin stability system | - |
| JFX55_RS06195 (1198831) | 1198831..1199052 | - | 222 | WP_024216021.1 | DUF987 domain-containing protein | - |
| JFX55_RS06200 (1199121) | 1199121..1199597 | - | 477 | WP_137594896.1 | RadC family protein | - |
| JFX55_RS06205 (1199613) | 1199613..1200098 | - | 486 | WP_198790224.1 | antirestriction protein | - |
| JFX55_RS06210 (1200190) | 1200190..1201011 | - | 822 | WP_198790223.1 | DUF932 domain-containing protein | - |
| JFX55_RS06215 (1201232) | 1201232..1201642 | - | 411 | WP_000846713.1 | hypothetical protein | - |
| JFX55_RS06220 (1201658) | 1201658..1202341 | - | 684 | WP_000775500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | csgB / csgD / csgE / csgF / csgG | 1188677..1231940 | 43263 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14161.13 Da Isoelectric Point: 8.5220
>T204164 WP_062871540.1 NZ_CP075663:c1197664-1197287 [Escherichia coli]
MKTLPDTHVREASRSPSPVTIWQTLLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKR
MKTLPDTHVREASRSPSPVTIWQTLLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEAKR
Download Length: 378 bp
>T204164 NZ_CP100651:523399-523749 [Bacillus halotolerans]
TTGATTGTGAAACGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGGGTGCGCCCGGT
TTTAGTGATCCAAAATGACATCGGAAATCGCTTCAGCCCAACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGGTTAACGGATAAGATTACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCTT
ACAGATCAGTTTGGCACTCATTGATTTTTAG
TTGATTGTGAAACGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGGGTGCGCCCGGT
TTTAGTGATCCAAAATGACATCGGAAATCGCTTCAGCCCAACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGGTTAACGGATAAGATTACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCTT
ACAGATCAGTTTGGCACTCATTGATTTTTAG
Antitoxin
Download Length: 123 a.a. Molecular weight: 13647.28 Da Isoelectric Point: 5.9573
>AT204164 WP_001285484.1 NZ_CP075663:c1198122-1197754 [Escherichia coli]
VSDTLHETNYPDDNNDRPWWGLPSTVTPCFGTRLVQEGNQLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLGLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTSETKK
VSDTLHETNYPDDNNDRPWWGLPSTVTPCFGTRLVQEGNQLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLGLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTSETKK
Download Length: 369 bp
>AT204164 NZ_CP100651:523113-523394 [Bacillus halotolerans]
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCCGAAAACCTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCCTATGTCAGCGAACGAACAACTCGTCACAACC
GTGATTTGATGAGACGCGGCTATATGGAAATGGCGAAAATCAACCTGAACATTTCTTCCGAGGCTCACTTTGCGGAGTGC
GAGGCTGAAACGACAGTTGAGCGCTTAGTCAGCGGAGGATAA
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCCGAAAACCTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCCTATGTCAGCGAACGAACAACTCGTCACAACC
GTGATTTGATGAGACGCGGCTATATGGAAATGGCGAAAATCAACCTGAACATTTCTTCCGAGGCTCACTTTGCGGAGTGC
GAGGCTGAAACGACAGTTGAGCGCTTAGTCAGCGGAGGATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|