Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 262022..262293 | Replicon | chromosome |
| Accession | NZ_CP075663 | ||
| Organism | Escherichia coli strain STEC2017-197 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 262152..262255 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 262022..262293 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX55_RS01315 | 258577..259239 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JFX55_RS01320 | 259263..259919 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFX55_RS01325 | 260021..260251 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFX55_RS01330 | 260390..260764 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFX55_RS01335 | 260768..261640 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JFX55_RS01340 | 261653..261994 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 262022..262293 | - | 272 | - | - | Antitoxin |
| - | 262152..262255 | + | 104 | - | - | Toxin |
| JFX55_RS01345 | 262390..263046 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JFX55_RS01350 | 263047..263238 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JFX55_RS01355 | 263343..263579 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JFX55_RS01360 | 263697..265136 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204155 NZ_CP075663:262152-262255 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204155 NZ_CP075663:c262293-262022 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
