Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4774217..4774488 | Replicon | chromosome |
| Accession | NZ_CP075652 | ||
| Organism | Escherichia coli strain STEC17-183 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4774347..4774450 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4774217..4774488 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX43_RS23095 | 4770772..4771434 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JFX43_RS23100 | 4771458..4772114 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFX43_RS23105 | 4772216..4772446 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFX43_RS23110 | 4772585..4772959 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFX43_RS23115 | 4772963..4773835 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| JFX43_RS23120 | 4773848..4774189 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4774217..4774488 | - | 272 | - | - | Antitoxin |
| - | 4774347..4774450 | + | 104 | - | - | Toxin |
| JFX43_RS23125 | 4774585..4775241 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JFX43_RS23130 | 4775242..4775433 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JFX43_RS23135 | 4775538..4775774 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JFX43_RS23140 | 4775892..4777331 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4695064..4790327 | 95263 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T204135 NZ_CP075652:4774347-4774450 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT204135 NZ_CP075652:c4774488-4774217 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
