Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2657893..2658164 | Replicon | chromosome |
| Accession | NZ_CP075627 | ||
| Organism | Escherichia coli strain P15-385 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2657931..2658034 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2657893..2658164 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX93_RS12950 | 2655050..2656489 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JFX93_RS12955 | 2656607..2656843 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JFX93_RS12960 | 2656948..2657139 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JFX93_RS12965 | 2657140..2657796 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2657893..2658164 | + | 272 | - | - | Antitoxin |
| - | 2657931..2658034 | - | 104 | - | - | Toxin |
| JFX93_RS12970 | 2658192..2658533 | - | 342 | WP_000976492.1 | YebY family protein | - |
| JFX93_RS12975 | 2658546..2659418 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JFX93_RS12980 | 2659422..2659796 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JFX93_RS12985 | 2659935..2660165 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JFX93_RS12990 | 2660267..2660923 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JFX93_RS12995 | 2660947..2661609 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203988 NZ_CP075627:c2658034-2657931 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203988 NZ_CP075627:2657893-2658164 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
