Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1830918..1831063 | Replicon | chromosome |
| Accession | NZ_CP075552 | ||
| Organism | Klebsiella pneumoniae strain RGF99-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1830954..1831056 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1830918..1831063 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI681_RS08850 (KI681_08845) | 1826048..1828108 | + | 2061 | WP_048289976.1 | oligopeptidase B | - |
| KI681_RS08855 (KI681_08850) | 1828112..1828771 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KI681_RS08860 (KI681_08855) | 1828850..1829080 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KI681_RS08865 (KI681_08860) | 1829193..1829567 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KI681_RS08870 (KI681_08865) | 1829571..1830440 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KI681_RS08875 (KI681_08870) | 1830457..1830795 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1830918..1831063 | - | 146 | - | - | Antitoxin |
| - | 1830954..1831056 | + | 103 | - | - | Toxin |
| KI681_RS08880 (KI681_08875) | 1831430..1831573 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KI681_RS08885 (KI681_08880) | 1831678..1832646 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KI681_RS08890 (KI681_08885) | 1832803..1833456 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| KI681_RS08895 (KI681_08890) | 1833453..1833644 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KI681_RS08900 (KI681_08895) | 1833742..1833981 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KI681_RS08905 (KI681_08900) | 1834097..1835530 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T203852 NZ_CP075552:1830954-1831056 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT203852 NZ_CP075552:c1831063-1830918 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
