Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1879222..1879367 | Replicon | chromosome |
| Accession | NZ_CP075548 | ||
| Organism | Klebsiella pneumoniae strain RGT40-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1879258..1879360 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1879222..1879367 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI675_RS09095 | 1874352..1876412 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KI675_RS09100 | 1876416..1877075 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KI675_RS09105 | 1877154..1877384 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KI675_RS09110 | 1877497..1877871 | + | 375 | WP_048279882.1 | CopC domain-containing protein YobA | - |
| KI675_RS09115 | 1877875..1878744 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| KI675_RS09120 | 1878761..1879099 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1879222..1879367 | - | 146 | - | - | Antitoxin |
| - | 1879258..1879360 | + | 103 | - | - | Toxin |
| KI675_RS09125 | 1879736..1879879 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KI675_RS09130 | 1879984..1880952 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KI675_RS09135 | 1881109..1881762 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KI675_RS09140 | 1881759..1881950 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KI675_RS09145 | 1882048..1882287 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KI675_RS09150 | 1882403..1883836 | - | 1434 | WP_065811950.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T203828 NZ_CP075548:1879258-1879360 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT203828 NZ_CP075548:c1879367-1879222 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
