Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1967729..1968000 | Replicon | chromosome |
| Accession | NZ_CP075487 | ||
| Organism | Escherichia coli strain NT1F34 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1967859..1967962 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1967729..1968000 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI26_RS10040 | 1964284..1964946 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IGI26_RS10045 | 1964970..1965626 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IGI26_RS10050 | 1965728..1965958 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IGI26_RS10055 | 1966097..1966471 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IGI26_RS10060 | 1966475..1967347 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IGI26_RS10065 | 1967360..1967701 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1967729..1968000 | - | 272 | - | - | Antitoxin |
| - | 1967859..1967962 | + | 104 | - | - | Toxin |
| IGI26_RS10070 | 1968097..1968753 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| IGI26_RS10075 | 1968754..1968945 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IGI26_RS10080 | 1969050..1969286 | - | 237 | WP_001295499.1 | YebV family protein | - |
| IGI26_RS10085 | 1969404..1970843 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1943033..1983838 | 40805 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203806 NZ_CP075487:1967859-1967962 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203806 NZ_CP075487:c1968000-1967729 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
