Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1948175..1948446 | Replicon | chromosome |
| Accession | NZ_CP075480 | ||
| Organism | Escherichia coli strain NT1N31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1948305..1948408 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1948175..1948446 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI30_RS09280 | 1944730..1945392 | - | 663 | Protein_1818 | exodeoxyribonuclease X | - |
| IGI30_RS09285 | 1945416..1946072 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IGI30_RS09290 | 1946174..1946404 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IGI30_RS09295 | 1946543..1946917 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IGI30_RS09300 | 1946921..1947793 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IGI30_RS09305 | 1947806..1948147 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1948175..1948446 | - | 272 | - | - | Antitoxin |
| - | 1948305..1948408 | + | 104 | - | - | Toxin |
| IGI30_RS09310 | 1948543..1949199 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| IGI30_RS09315 | 1949200..1949391 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IGI30_RS09320 | 1949496..1949732 | - | 237 | WP_001295499.1 | YebV family protein | - |
| IGI30_RS09325 | 1949850..1951289 | - | 1440 | WP_053295478.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203750 NZ_CP075480:1948305-1948408 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203750 NZ_CP075480:c1948446-1948175 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
