Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1950377..1950648 | Replicon | chromosome |
| Accession | NZ_CP075472 | ||
| Organism | Escherichia coli strain NT1F25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1950507..1950610 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1950377..1950648 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI24_RS10090 | 1946932..1947594 | - | 663 | WP_032297904.1 | exodeoxyribonuclease X | - |
| IGI24_RS10095 | 1947618..1948274 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| IGI24_RS10100 | 1948376..1948606 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IGI24_RS10105 | 1948745..1949119 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| IGI24_RS10110 | 1949123..1949995 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| IGI24_RS10115 | 1950008..1950349 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1950377..1950648 | - | 272 | - | - | Antitoxin |
| - | 1950507..1950610 | + | 104 | - | - | Toxin |
| IGI24_RS10120 | 1950745..1951401 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| IGI24_RS10125 | 1951402..1951593 | - | 192 | WP_001338167.1 | YebW family protein | - |
| IGI24_RS10130 | 1951698..1951934 | - | 237 | WP_001338166.1 | YebV family protein | - |
| IGI24_RS10135 | 1952052..1953491 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203675 NZ_CP075472:1950507-1950610 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203675 NZ_CP075472:c1950648-1950377 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
