Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2525034..2525305 | Replicon | chromosome |
| Accession | NC_002695 | ||
| Organism | Escherichia coli O157:H7 str. Sakai | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2525072..2525175 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2525034..2525305 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECs_2545 | 2522110..2523630 | + | 1521 | NP_310572.3 | 16S rRNA m(5)C1407 methyltransferase | - |
| ECs_2546 | 2523748..2523984 | + | 237 | NP_310573.2 | hypothetical protein | - |
| ECs_2547 | 2524005..2524280 | + | 276 | NP_310574.1 | hypothetical protein | - |
| ECs_2548 | 2524281..2524937 | - | 657 | NP_310575.2 | serine/threonine-specific protein phosphatase 1 | - |
| - | 2525034..2525305 | + | 272 | - | - | Antitoxin |
| - | 2525072..2525175 | - | 104 | - | - | Toxin |
| ECs_2549 | 2525333..2525674 | - | 342 | NP_310576.1 | hypothetical protein | - |
| ECs_2550 | 2525687..2526559 | - | 873 | NP_310577.1 | inner membrane protein | - |
| ECs_2551 | 2526563..2526937 | - | 375 | NP_310578.1 | hypothetical protein | - |
| ECs_2552 | 2527076..2527306 | + | 231 | NP_310579.1 | DNA polymerase III theta subunit HolE | - |
| ECs_2553 | 2527408..2528064 | + | 657 | NP_310580.1 | hypothetical protein | - |
| ECs_2554 | 2528088..2528750 | + | 663 | NP_310581.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T20356 NC_002695:c2525175-2525072 [Escherichia coli O157:H7 str. Sakai]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT20356 NC_002695:2525034-2525305 [Escherichia coli O157:H7 str. Sakai]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
