Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2182949..2183220 | Replicon | chromosome |
| Accession | NZ_CP075374 | ||
| Organism | Escherichia coli strain no107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2183079..2183182 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2182949..2183220 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIB02_RS10705 | 2179504..2180166 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KIB02_RS10710 | 2180190..2180846 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KIB02_RS10715 | 2180948..2181178 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KIB02_RS10720 | 2181317..2181691 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| KIB02_RS10725 | 2181695..2182567 | + | 873 | WP_063117135.1 | copper homeostasis membrane protein CopD | - |
| KIB02_RS10730 | 2182580..2182921 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2182949..2183220 | - | 272 | - | - | Antitoxin |
| - | 2183079..2183182 | + | 104 | - | - | Toxin |
| KIB02_RS10735 | 2183317..2183973 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KIB02_RS10740 | 2183974..2184165 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KIB02_RS10745 | 2184270..2184506 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KIB02_RS10750 | 2184624..2186063 | - | 1440 | WP_063117158.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203542 NZ_CP075374:2183079-2183182 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT203542 NZ_CP075374:c2183220-2182949 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
