Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3482202..3482347 | Replicon | chromosome |
| Accession | NZ_CP075256 | ||
| Organism | Klebsiella pneumoniae strain SZP4-9-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3482209..3482311 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3482202..3482347 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI741_RS16940 | 3477733..3479166 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KI741_RS16945 | 3479282..3479521 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KI741_RS16950 | 3479619..3479810 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KI741_RS16955 | 3479807..3480460 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| KI741_RS16960 | 3480617..3481585 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KI741_RS16965 | 3481690..3481833 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 3482202..3482347 | + | 146 | - | - | Antitoxin |
| - | 3482209..3482311 | - | 103 | - | - | Toxin |
| KI741_RS16970 | 3482470..3482808 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KI741_RS16975 | 3482825..3483694 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KI741_RS16980 | 3483698..3484072 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| KI741_RS16985 | 3484185..3484415 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KI741_RS16990 | 3484494..3485153 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KI741_RS16995 | 3485157..3487217 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T203389 NZ_CP075256:c3482311-3482209 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT203389 NZ_CP075256:3482202-3482347 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
