Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/DUF433(antitoxin) |
| Location | 1654011..1654507 | Replicon | chromosome |
| Accession | NZ_CP075171 | ||
| Organism | Leptodesmis sichuanensis PKUAC-SCTA121 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | KIK02_RS07770 | Protein ID | WP_233748032.1 |
| Coordinates | 1654011..1654286 (-) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | KIK02_RS07775 | Protein ID | WP_233748033.1 |
| Coordinates | 1654283..1654507 (-) | Length | 75 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIK02_RS07725 (KIK02_07800) | 1649071..1650213 | - | 1143 | WP_233748028.1 | GUN4 domain-containing protein | - |
| KIK02_RS07730 (KIK02_07805) | 1650338..1650610 | - | 273 | WP_233748029.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KIK02_RS07735 (KIK02_07810) | 1650607..1650843 | - | 237 | WP_233748030.1 | hypothetical protein | - |
| KIK02_RS07740 (KIK02_07815) | 1651231..1651461 | + | 231 | Protein_1543 | IS982 family transposase | - |
| KIK02_RS07745 (KIK02_07820) | 1651531..1652414 | + | 884 | WP_233748031.1 | IS630 family transposase | - |
| KIK02_RS07750 (KIK02_07825) | 1652407..1653060 | + | 654 | Protein_1545 | IS982 family transposase | - |
| KIK02_RS07755 | 1653035..1653163 | + | 129 | Protein_1546 | HNH endonuclease signature motif containing protein | - |
| KIK02_RS07760 | 1653191..1653388 | + | 198 | WP_233749051.1 | hypothetical protein | - |
| KIK02_RS07765 (KIK02_07835) | 1653731..1653916 | - | 186 | Protein_1548 | DUF5615 family PIN-like protein | - |
| KIK02_RS07770 (KIK02_07840) | 1654011..1654286 | - | 276 | WP_233748032.1 | DUF5615 family PIN-like protein | Toxin |
| KIK02_RS07775 (KIK02_07845) | 1654283..1654507 | - | 225 | WP_233748033.1 | DUF433 domain-containing protein | Antitoxin |
| KIK02_RS07780 (KIK02_07850) | 1654666..1655946 | - | 1281 | WP_233748034.1 | GUN4 domain-containing protein | - |
| KIK02_RS07785 (KIK02_07855) | 1656161..1656370 | + | 210 | WP_233748035.1 | hypothetical protein | - |
| KIK02_RS07790 (KIK02_07860) | 1656371..1656784 | + | 414 | WP_233748036.1 | HNH endonuclease signature motif containing protein | - |
| KIK02_RS07795 (KIK02_07870) | 1657177..1657743 | - | 567 | WP_233748037.1 | Uma2 family endonuclease | - |
| KIK02_RS07800 (KIK02_07875) | 1658154..1658366 | - | 213 | WP_233748038.1 | hypothetical protein | - |
| KIK02_RS07805 (KIK02_07880) | 1658370..1658696 | - | 327 | WP_233748039.1 | hypothetical protein | - |
| KIK02_RS07810 (KIK02_07885) | 1659212..1659427 | + | 216 | WP_233748040.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1651920..1652414 | 494 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 9827.14 Da Isoelectric Point: 4.6062
>T203328 WP_233748032.1 NZ_CP075171:c1654286-1654011 [Leptodesmis sichuanensis PKUAC-SCTA121]
MKIWVDAQLSPAIATWISSTFGVTALALRDIGLRDAEDPEIFEAAKAQGVIFIPHSALSTGTSGINDAATDSQKPWPEIY
LNKQHLFSTAL
MKIWVDAQLSPAIATWISSTFGVTALALRDIGLRDAEDPEIFEAAKAQGVIFIPHSALSTGTSGINDAATDSQKPWPEIY
LNKQHLFSTAL
Download Length: 276 bp
>T203328 NZ_CP099912:4034574-4034915 [Escherichia albertii]
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGCCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGCGATAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCCCCCGCCGCCGAAGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAAGCAGGTGCAGGAATTTATTGGGGTGATTGC
CGGTAAACAGAAAGTCGCCTGA
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGCCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGCGATAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCCCCCGCCGCCGAAGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAAGCAGGTGCAGGAATTTATTGGGGTGATTGC
CGGTAAACAGAAAGTCGCCTGA
Antitoxin
Download Length: 75 a.a. Molecular weight: 8116.49 Da Isoelectric Point: 6.9465
>AT203328 WP_233748033.1 NZ_CP075171:c1654507-1654283 [Leptodesmis sichuanensis PKUAC-SCTA121]
MSDLPKRITVNPNQCGGRPCIRGMRIRVSDVLDLFAAGLSAEQILEEMPDLEANDLKAALLYASRKLNHPVLVA
MSDLPKRITVNPNQCGGRPCIRGMRIRVSDVLDLFAAGLSAEQILEEMPDLEANDLKAALLYASRKLNHPVLVA
Download Length: 225 bp
>AT203328 NZ_CP099912:c4034579-4034503 [Escherichia albertii]
AGTCATGATTACTATTCTCCATAAATAGTGATTGTGATGAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
AGTCATGATTACTATTCTCCATAAATAGTGATTGTGATGAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|