Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3464971..3465061 Replicon chromosome
Accession NZ_CP075169
Organism Sodalis ligni strain dw23

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3464975..3465061 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3464971..3465055 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GTU79_RS16095 (GTU79_16085) 3460355..3460492 + 138 WP_203521213.1 hypothetical protein -
GTU79_RS16100 (GTU79_16090) 3461352..3461504 + 153 WP_214513134.1 hypothetical protein -
GTU79_RS16105 (GTU79_16095) 3461617..3462039 + 423 Protein_3179 type II toxin-antitoxin system death-on-curing family toxin -
GTU79_RS16110 (GTU79_16100) 3462558..3463028 - 471 WP_214513135.1 RES domain-containing protein -
GTU79_RS16115 (GTU79_16105) 3463229..3463654 - 426 WP_253073714.1 hypothetical protein -
GTU79_RS16120 (GTU79_16110) 3463750..3464528 - 779 Protein_3182 helix-turn-helix domain-containing protein -
GTU79_RS16125 (GTU79_16115) 3464729..3464899 + 171 Protein_3183 tyrosine-type recombinase/integrase -
- 3464971..3465055 + 85 - - Antitoxin
- 3464975..3465061 - 87 - - Toxin
GTU79_RS16130 (GTU79_16120) 3465273..3465566 - 294 WP_253073311.1 DUF2511 domain-containing protein -
GTU79_RS16135 (GTU79_16125) 3465609..3466493 - 885 WP_203521209.1 copper homeostasis membrane protein CopD -
GTU79_RS16140 (GTU79_16130) 3466855..3467332 - 478 Protein_3186 non-heme ferritin -
GTU79_RS16145 (GTU79_16135) 3467695..3467914 + 220 Protein_3187 DNA polymerase III subunit theta -
GTU79_RS16150 (GTU79_16140) 3468337..3469020 + 684 WP_132921290.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 87 bp

>T203307 NZ_CP075169:c3465061-3464975 [Sodalis ligni]
AGCTTACATTAATGCCAACTTTTAGCGCACGGCTCTATCCAAGAGCCATTTCCTGGACCGAATATAGGAATCGTATTCGG
TCTTTTT

Antitoxin


Download         Length: 85 bp

>AT203307 NZ_CP075169:3464971-3465055 [Sodalis ligni]
GATTAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGAAATGGCTCTTGGATAGAGCCGTGCGCTAAAAGTTGGCAT
TAATG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References