Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078192..2078342 | Replicon | chromosome |
| Accession | NZ_CP075140 | ||
| Organism | Salmonella enterica strain CFSAN044865 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078230..2078333 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078192..2078342 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7R87_RS10000 | 2074618..2075313 | - | 696 | WP_023246231.1 | exodeoxyribonuclease X | - |
| A7R87_RS10005 | 2075337..2075993 | - | 657 | WP_023246230.1 | carbon-nitrogen hydrolase family protein | - |
| A7R87_RS10010 | 2076101..2076331 | - | 231 | WP_023246229.1 | DNA polymerase III subunit theta | - |
| A7R87_RS10015 | 2076469..2076843 | + | 375 | WP_023246228.1 | CopC domain-containing protein YobA | - |
| A7R87_RS10020 | 2076844..2077719 | + | 876 | WP_077918388.1 | copper homeostasis membrane protein CopD | - |
| A7R87_RS10025 | 2077736..2078086 | + | 351 | WP_023246226.1 | YebY family protein | - |
| - | 2078192..2078342 | - | 151 | - | - | Antitoxin |
| - | 2078230..2078333 | + | 104 | - | - | Toxin |
| A7R87_RS10030 | 2078449..2078544 | - | 96 | Protein_1980 | integrase | - |
| A7R87_RS10035 | 2079057..2079521 | + | 465 | WP_023245925.1 | helix-turn-helix domain-containing protein | - |
| A7R87_RS10040 | 2080001..2080450 | - | 450 | WP_023245926.1 | hypothetical protein | - |
| A7R87_RS10045 | 2081420..2081626 | + | 207 | WP_044135989.1 | phage holin | - |
| A7R87_RS10050 | 2081607..2081957 | + | 351 | Protein_1984 | lysozyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2072528..2086102 | 13574 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203256 NZ_CP075140:2078230-2078333 [Salmonella enterica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT203256 NZ_CP075140:c2078342-2078192 [Salmonella enterica]
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
