Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2600104..2600375 | Replicon | chromosome |
| Accession | NC_002655 | ||
| Organism | Escherichia coli O157:H7 str. EDL933 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2600142..2600245 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2600104..2600375 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Z_RS13535 (Z2882) | 2597261..2598700 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| Z_RS13540 (Z2883) | 2598818..2599054 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| Z_RS13545 (Z2884) | 2599159..2599350 | + | 192 | WP_001296140.1 | YebW family protein | - |
| Z_RS13550 (Z2885) | 2599351..2600007 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2600104..2600375 | + | 272 | - | - | Antitoxin |
| - | 2600142..2600245 | - | 104 | - | - | Toxin |
| Z_RS13560 (Z2887) | 2600403..2600744 | - | 342 | WP_000976483.1 | YebY family protein | - |
| Z_RS13565 (Z2888) | 2600757..2601629 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| Z_RS13570 (Z2889) | 2601633..2602007 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| Z_RS13575 (Z2891) | 2602146..2602376 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| Z_RS13580 (Z2893) | 2602478..2603134 | + | 657 | WP_000119267.1 | carbon-nitrogen hydrolase family protein | - |
| Z_RS13585 (Z2894) | 2603158..2603820 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T20322 NC_002655:c2600245-2600142 [Escherichia coli O157:H7 str. EDL933]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT20322 NC_002655:2600104-2600375 [Escherichia coli O157:H7 str. EDL933]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
