Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2046949..2047094 | Replicon | chromosome |
| Accession | NZ_CP075137 | ||
| Organism | Salmonella enterica strain CFSAN044885 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046989..2047092 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2046949..2047094 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7S07_RS09775 | 2043375..2044073 | - | 699 | WP_000944285.1 | exodeoxyribonuclease X | - |
| A7S07_RS09780 | 2044097..2044753 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| A7S07_RS09785 | 2044861..2045091 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| A7S07_RS09790 | 2045229..2045603 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| A7S07_RS09795 | 2045604..2046479 | + | 876 | WP_017441953.1 | copper homeostasis membrane protein CopD | - |
| A7S07_RS09800 | 2046496..2046849 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2046949..2047094 | - | 146 | - | - | Antitoxin |
| - | 2046989..2047092 | + | 104 | - | - | Toxin |
| A7S07_RS09805 | 2047223..2047492 | - | 270 | WP_023216648.1 | tyrosine-type recombinase/integrase | - |
| A7S07_RS23600 | 2047581..2047664 | + | 84 | Protein_1921 | phage tail protein | - |
| A7S07_RS09815 | 2047837..2050257 | + | 2421 | WP_024146377.1 | type III secretion system effector SspH3 | - |
| A7S07_RS09825 | 2050399..2050940 | + | 542 | Protein_1923 | transposase | - |
| A7S07_RS09830 | 2051086..2051226 | - | 141 | WP_001640444.1 | hypothetical protein | - |
| A7S07_RS09835 | 2051392..2051661 | - | 270 | WP_077909686.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2050602..2050940 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203217 NZ_CP075137:2046989-2047092 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT203217 NZ_CP075137:c2047094-2046949 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
