Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2105477..2105620 | Replicon | chromosome |
| Accession | NZ_CP075135 | ||
| Organism | Salmonella enterica strain CFSAN044888 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2105515..2105618 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2105477..2105620 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7S10_RS10065 | 2101902..2102600 | - | 699 | WP_000944280.1 | exodeoxyribonuclease X | - |
| A7S10_RS10070 | 2102624..2103280 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| A7S10_RS10075 | 2103387..2103617 | - | 231 | WP_000856225.1 | DNA polymerase III subunit theta | - |
| A7S10_RS10080 | 2103755..2104129 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| A7S10_RS10085 | 2104130..2105005 | + | 876 | WP_000979696.1 | copper homeostasis membrane protein CopD | - |
| A7S10_RS10090 | 2105022..2105375 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2105477..2105620 | - | 144 | - | - | Antitoxin |
| - | 2105515..2105618 | + | 104 | - | - | Toxin |
| A7S10_RS10095 | 2105758..2106837 | - | 1080 | Protein_1983 | phage integrase Arm DNA-binding domain-containing protein | - |
| A7S10_RS10100 | 2106870..2108018 | - | 1149 | Protein_1984 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| A7S10_RS10105 | 2108010..2108258 | + | 249 | Protein_1985 | glycoside hydrolase family 19 protein | - |
| A7S10_RS10110 | 2108255..2108788 | + | 534 | WP_001529209.1 | DUF2514 domain-containing protein | - |
| A7S10_RS10115 | 2109057..2109224 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| A7S10_RS10120 | 2109527..2110018 | + | 492 | WP_001629197.1 | DUF1441 family protein | - |
| A7S10_RS10125 | 2110110..2110572 | + | 463 | Protein_1989 | phage terminase large subunit family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2083606..2138626 | 55020 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203196 NZ_CP075135:2105515-2105618 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT203196 NZ_CP075135:c2105620-2105477 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
