Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2849074..2849224 | Replicon | chromosome |
| Accession | NZ_CP075128 | ||
| Organism | Salmonella enterica subsp. diarizonae serovar 60:r:enxz15 strain CFSAN044923 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2849083..2849186 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2849074..2849224 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7S45_RS13655 | 2845459..2845809 | - | 351 | Protein_2706 | lysozyme | - |
| A7S45_RS13660 | 2845790..2845996 | - | 207 | WP_044135989.1 | phage holin | - |
| A7S45_RS13665 | 2846966..2847415 | + | 450 | WP_023245926.1 | hypothetical protein | - |
| A7S45_RS13670 | 2847895..2848359 | - | 465 | WP_023245925.1 | helix-turn-helix domain-containing protein | - |
| A7S45_RS13675 | 2848872..2848967 | + | 96 | Protein_2710 | integrase | - |
| - | 2849074..2849224 | + | 151 | - | - | Antitoxin |
| - | 2849083..2849186 | - | 104 | - | - | Toxin |
| A7S45_RS13680 | 2849330..2849680 | - | 351 | WP_023246226.1 | YebY family protein | - |
| A7S45_RS13685 | 2849697..2850572 | - | 876 | WP_077918388.1 | copper homeostasis membrane protein CopD | - |
| A7S45_RS13690 | 2850573..2850947 | - | 375 | WP_023246228.1 | CopC domain-containing protein YobA | - |
| A7S45_RS13695 | 2851085..2851315 | + | 231 | WP_023246229.1 | DNA polymerase III subunit theta | - |
| A7S45_RS13700 | 2851423..2852079 | + | 657 | WP_023246230.1 | carbon-nitrogen hydrolase family protein | - |
| A7S45_RS13705 | 2852103..2852798 | + | 696 | WP_023246231.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2841917..2856565 | 14648 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203120 NZ_CP075128:c2849186-2849083 [Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT203120 NZ_CP075128:2849074-2849224 [Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15]
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
TTTAAAAACAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAA
AGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
