Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2687057..2687202 | Replicon | chromosome |
| Accession | NZ_CP075118 | ||
| Organism | Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN051890 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2687059..2687162 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2687057..2687202 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCB09_RS13090 | 2682257..2682475 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| BCB09_RS23165 | 2682777..2682875 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| BCB09_RS13100 | 2683194..2685173 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| BCB09_RS13105 | 2685587..2685865 | + | 279 | WP_001575998.1 | excisionase | - |
| BCB09_RS13110 | 2685840..2686919 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2687057..2687202 | + | 146 | - | - | Antitoxin |
| - | 2687059..2687162 | - | 104 | - | - | Toxin |
| BCB09_RS13115 | 2687302..2687655 | - | 354 | WP_000722370.1 | YebY family protein | - |
| BCB09_RS13120 | 2687672..2688547 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| BCB09_RS13125 | 2688548..2688922 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| BCB09_RS13130 | 2689060..2689290 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| BCB09_RS13135 | 2689398..2690054 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| BCB09_RS13140 | 2690078..2690776 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 2651029..2692864 | 41835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T203004 NZ_CP075118:c2687162-2687059 [Salmonella enterica subsp. enterica serovar Enteritidis]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT203004 NZ_CP075118:2687057-2687202 [Salmonella enterica subsp. enterica serovar Enteritidis]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
