Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2076796..2077067 | Replicon | chromosome |
| Accession | NZ_CP075062 | ||
| Organism | Escherichia coli strain EC_J_9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2076926..2077029 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2076796..2077067 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4F96_RS10050 | 2073351..2074013 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H4F96_RS10055 | 2074037..2074693 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H4F96_RS10060 | 2074795..2075025 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4F96_RS10065 | 2075164..2075538 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H4F96_RS10070 | 2075542..2076414 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| H4F96_RS10075 | 2076427..2076768 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2076796..2077067 | - | 272 | - | - | Antitoxin |
| - | 2076926..2077029 | + | 104 | - | - | Toxin |
| H4F96_RS10080 | 2077164..2077820 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| H4F96_RS10085 | 2077821..2078012 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H4F96_RS10090 | 2078117..2078353 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H4F96_RS10095 | 2078471..2079910 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202770 NZ_CP075062:2076926-2077029 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT202770 NZ_CP075062:c2077067-2076796 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
