Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2695969..2696240 | Replicon | chromosome |
| Accession | NZ_CP075061 | ||
| Organism | Escherichia coli strain TCM_B_2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2696007..2696110 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2695969..2696240 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4F95_RS16015 | 2693126..2694565 | + | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H4F95_RS16020 | 2694683..2694919 | + | 237 | WP_001295499.1 | YebV family protein | - |
| H4F95_RS16025 | 2695024..2695215 | + | 192 | WP_000457842.1 | YebW family protein | - |
| H4F95_RS16030 | 2695216..2695872 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2695969..2696240 | + | 272 | - | - | Antitoxin |
| - | 2696007..2696110 | - | 104 | - | - | Toxin |
| H4F95_RS16035 | 2696268..2696609 | - | 342 | WP_000976492.1 | YebY family protein | - |
| H4F95_RS16040 | 2696622..2697494 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H4F95_RS16045 | 2697498..2697872 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H4F95_RS16050 | 2698011..2698241 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H4F95_RS16055 | 2698343..2698999 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H4F95_RS16060 | 2699023..2699685 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202749 NZ_CP075061:c2696110-2696007 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT202749 NZ_CP075061:2695969-2696240 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
