Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 376013..376284 | Replicon | chromosome |
| Accession | NZ_CP074701 | ||
| Organism | Escherichia coli strain 702/18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 376144..376246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 376013..376284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KH969_RS01940 | 372583..373245 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KH969_RS01945 | 373269..373925 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KH969_RS01950 | 374027..374257 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KH969_RS01955 | 374396..374770 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| KH969_RS01960 | 374774..375631 | + | 858 | WP_217477880.1 | copper homeostasis membrane protein CopD | - |
| KH969_RS01965 | 375644..375985 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 376013..376284 | - | 272 | - | - | Antitoxin |
| - | 376144..376246 | + | 103 | - | - | Toxin |
| KH969_RS01970 | 376381..377037 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| KH969_RS01975 | 377038..377229 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KH969_RS01980 | 377334..377570 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KH969_RS01985 | 377688..379127 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202665 NZ_CP074701:376144-376246 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT202665 NZ_CP074701:c376284-376013 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
