Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1868485..1868632 | Replicon | chromosome |
| Accession | NZ_CP074592 | ||
| Organism | Salmonella bongori serovar 40:z35:- strain CFSAN001045 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1868523..1868626 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1868485..1868632 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AIT23_RS08845 | 1864917..1865606 | - | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
| AIT23_RS08850 | 1865630..1866286 | - | 657 | WP_000100264.1 | carbon-nitrogen hydrolase family protein | - |
| AIT23_RS08855 | 1866394..1866624 | - | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| AIT23_RS08860 | 1866762..1867136 | + | 375 | WP_000885911.1 | CopC domain-containing protein YobA | - |
| AIT23_RS08865 | 1867137..1868012 | + | 876 | WP_079772757.1 | copper homeostasis membrane protein CopD | - |
| AIT23_RS08870 | 1868029..1868379 | + | 351 | WP_079772756.1 | YebY family protein | - |
| - | 1868485..1868632 | - | 148 | - | - | Antitoxin |
| - | 1868523..1868626 | + | 104 | - | - | Toxin |
| AIT23_RS08875 | 1868911..1870053 | - | 1143 | WP_079772755.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| AIT23_RS08880 | 1870638..1871114 | - | 477 | WP_079772754.1 | hypothetical protein | - |
| AIT23_RS08885 | 1871740..1872462 | + | 723 | WP_181379325.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202502 NZ_CP074592:1868523-1868626 [Salmonella bongori serovar 40:z35:-]
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT202502 NZ_CP074592:c1868632-1868485 [Salmonella bongori serovar 40:z35:-]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
