Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1181039..1181183 | Replicon | chromosome |
| Accession | NZ_CP074584 | ||
| Organism | Enterobacter asburiae strain L1 delta-T1RM | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1181074..1181177 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1181039..1181183 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIJ47_RS05620 (KIJ47_05620) | 1177523..1178185 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| KIJ47_RS05625 (KIJ47_05625) | 1178210..1178860 | - | 651 | WP_029740943.1 | carbon-nitrogen hydrolase family protein | - |
| KIJ47_RS05630 (KIJ47_05630) | 1178971..1179201 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| KIJ47_RS05635 (KIJ47_05635) | 1179338..1179709 | + | 372 | WP_029740944.1 | CopC domain-containing protein YobA | - |
| KIJ47_RS05640 (KIJ47_05640) | 1179711..1180580 | + | 870 | WP_029740945.1 | copper homeostasis membrane protein CopD | - |
| KIJ47_RS05645 (KIJ47_05645) | 1180597..1180935 | + | 339 | WP_029740946.1 | YebY family protein | - |
| - | 1181039..1181183 | - | 145 | - | - | Antitoxin |
| - | 1181074..1181177 | + | 104 | - | - | Toxin |
| KIJ47_RS05650 (KIJ47_05650) | 1181375..1182271 | - | 897 | WP_029740947.1 | benzoate transporter | - |
| KIJ47_RS05655 (KIJ47_05655) | 1182445..1183386 | - | 942 | WP_033145838.1 | VirK/YbjX family protein | - |
| KIJ47_RS05660 (KIJ47_05660) | 1183553..1184197 | + | 645 | WP_029741987.1 | protein-serine/threonine phosphatase | - |
| KIJ47_RS05665 (KIJ47_05665) | 1184232..1184471 | - | 240 | WP_008500472.1 | YebV family protein | - |
| KIJ47_RS05670 (KIJ47_05670) | 1184578..1186026 | - | 1449 | WP_196230760.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202482 NZ_CP074584:1181074-1181177 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT202482 NZ_CP074584:c1181183-1181039 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
