Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4870703..4870848 | Replicon | chromosome |
| Accession | NZ_CP074580 | ||
| Organism | Klebsiella pneumoniae strain B30155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4870739..4870841 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4870703..4870848 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KH752_RS23345 (KH752_23345) | 4865833..4867893 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| KH752_RS23350 (KH752_23350) | 4867897..4868556 | - | 660 | WP_134919889.1 | exodeoxyribonuclease X | - |
| KH752_RS23355 (KH752_23355) | 4868635..4868865 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KH752_RS23360 (KH752_23360) | 4868978..4869352 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KH752_RS23365 (KH752_23365) | 4869356..4870225 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| KH752_RS23370 (KH752_23370) | 4870242..4870580 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4870703..4870848 | - | 146 | - | - | Antitoxin |
| - | 4870739..4870841 | + | 103 | - | - | Toxin |
| KH752_RS23375 (KH752_23375) | 4871216..4871359 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KH752_RS23380 (KH752_23380) | 4871464..4872432 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KH752_RS23385 (KH752_23385) | 4872589..4873242 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| KH752_RS23390 (KH752_23390) | 4873239..4873430 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KH752_RS23395 (KH752_23395) | 4873528..4873767 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KH752_RS23400 (KH752_23400) | 4873883..4875316 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202469 NZ_CP074580:4870739-4870841 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202469 NZ_CP074580:c4870848-4870703 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
