Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1716393..1716661 | Replicon | chromosome |
| Accession | NZ_CP074576 | ||
| Organism | Escherichia coli strain CS18F | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1716521..1716623 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1716393..1716661 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHZ70_RS08165 | 1712946..1713608 | - | 663 | WP_121865518.1 | exodeoxyribonuclease X | - |
| KHZ70_RS08170 | 1713632..1714288 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KHZ70_RS08175 | 1714390..1714620 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| KHZ70_RS08180 | 1714759..1715133 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KHZ70_RS08185 | 1715137..1716009 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| KHZ70_RS08190 | 1716022..1716363 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1716393..1716661 | - | 269 | - | - | Antitoxin |
| - | 1716521..1716623 | + | 103 | - | - | Toxin |
| KHZ70_RS08195 | 1716758..1717414 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| KHZ70_RS08200 | 1717415..1717606 | - | 192 | WP_001317886.1 | YebW family protein | - |
| KHZ70_RS08205 | 1717711..1717947 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KHZ70_RS08210 | 1718065..1719504 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202421 NZ_CP074576:1716521-1716623 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT202421 NZ_CP074576:c1716661-1716393 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
