Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2617556..2617701 | Replicon | chromosome |
| Accession | NZ_CP074558 | ||
| Organism | Klebsiella pneumoniae strain S39_CRE40 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2617563..2617665 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2617556..2617701 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHW03_RS13110 (KHW03_13070) | 2613088..2614521 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KHW03_RS13115 (KHW03_13075) | 2614637..2614876 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KHW03_RS13120 (KHW03_13080) | 2614974..2615165 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KHW03_RS13125 (KHW03_13085) | 2615162..2615815 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KHW03_RS13130 (KHW03_13090) | 2615972..2616940 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KHW03_RS13135 (KHW03_13095) | 2617045..2617188 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2617556..2617701 | + | 146 | - | - | Antitoxin |
| - | 2617563..2617665 | - | 103 | - | - | Toxin |
| KHW03_RS13140 (KHW03_13100) | 2617824..2618162 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KHW03_RS13145 (KHW03_13105) | 2618179..2619048 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KHW03_RS13150 (KHW03_13110) | 2619052..2619426 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KHW03_RS13155 (KHW03_13115) | 2619539..2619769 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KHW03_RS13160 (KHW03_13120) | 2619848..2620507 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KHW03_RS13165 (KHW03_13125) | 2620511..2622571 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202385 NZ_CP074558:c2617665-2617563 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202385 NZ_CP074558:2617556-2617701 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
