Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2129841..2129986 | Replicon | chromosome |
| Accession | NZ_CP074539 | ||
| Organism | Klebsiella pneumoniae strain S20_CRE20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2129877..2129979 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2129841..2129986 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV98_RS10290 (KHV98_10280) | 2124971..2127031 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KHV98_RS10295 (KHV98_10285) | 2127035..2127694 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KHV98_RS10300 (KHV98_10290) | 2127773..2128003 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KHV98_RS10305 (KHV98_10295) | 2128116..2128490 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KHV98_RS10310 (KHV98_10300) | 2128494..2129363 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KHV98_RS10315 (KHV98_10305) | 2129380..2129718 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2129841..2129986 | - | 146 | - | - | Antitoxin |
| - | 2129877..2129979 | + | 103 | - | - | Toxin |
| KHV98_RS10320 (KHV98_10310) | 2130354..2130497 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KHV98_RS10325 (KHV98_10315) | 2130602..2131570 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KHV98_RS10330 (KHV98_10320) | 2131727..2132380 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KHV98_RS10335 (KHV98_10325) | 2132377..2132568 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KHV98_RS10340 (KHV98_10330) | 2132666..2132905 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KHV98_RS10345 (KHV98_10335) | 2133021..2134454 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202303 NZ_CP074539:2129877-2129979 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202303 NZ_CP074539:c2129986-2129841 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
