Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2136033..2136178 | Replicon | chromosome |
| Accession | NZ_CP074535 | ||
| Organism | Klebsiella pneumoniae strain S16_CRE16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2136069..2136171 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2136033..2136178 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV97_RS10295 (KHV97_10290) | 2131163..2133223 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KHV97_RS10300 (KHV97_10295) | 2133227..2133886 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KHV97_RS10305 (KHV97_10300) | 2133965..2134195 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KHV97_RS10310 (KHV97_10305) | 2134308..2134682 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KHV97_RS10315 (KHV97_10310) | 2134686..2135555 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KHV97_RS10320 (KHV97_10315) | 2135572..2135910 | + | 339 | WP_002911404.1 | YebY family protein | - |
| KHV97_RS10325 (KHV97_10320) | 2136546..2136689 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KHV97_RS10330 (KHV97_10325) | 2136794..2137762 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KHV97_RS10335 (KHV97_10330) | 2137919..2138572 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KHV97_RS10340 (KHV97_10335) | 2138569..2138760 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KHV97_RS10345 (KHV97_10340) | 2138858..2139097 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KHV97_RS10350 (KHV97_10345) | 2139213..2140646 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202283 NZ_CP074535:2136069-2136171 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202283 NZ_CP074535:c2136178-2136033 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
