Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1850562..1850707 | Replicon | chromosome |
| Accession | NZ_CP074519 | ||
| Organism | Klebsiella pneumoniae strain S10_CRE10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1850598..1850700 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1850562..1850707 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV94_RS09040 | 1845692..1847752 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KHV94_RS09045 | 1847756..1848415 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KHV94_RS09050 | 1848494..1848724 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KHV94_RS09055 | 1848837..1849211 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KHV94_RS09060 | 1849215..1850084 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| KHV94_RS09065 | 1850101..1850439 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1850562..1850707 | - | 146 | - | - | Antitoxin |
| - | 1850598..1850700 | + | 103 | - | - | Toxin |
| KHV94_RS09070 | 1851075..1851218 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KHV94_RS09075 | 1851323..1852291 | - | 969 | WP_074195444.1 | VirK/YbjX family protein | - |
| KHV94_RS09080 | 1852448..1853101 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KHV94_RS09085 | 1853098..1853289 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KHV94_RS09090 | 1853387..1853626 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KHV94_RS09095 | 1853742..1855175 | - | 1434 | WP_064190786.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202220 NZ_CP074519:1850598-1850700 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202220 NZ_CP074519:c1850707-1850562 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
