Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3494784..3494952 | Replicon | chromosome |
| Accession | NZ_CP074449 | ||
| Organism | Klebsiella michiganensis strain S4_CRE4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3494791..3494894 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3494784..3494952 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV91_RS16250 (KHV91_16225) | 3490058..3490576 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| KHV91_RS16255 (KHV91_16230) | 3490595..3491359 | + | 765 | WP_049082702.1 | fimbria/pilus periplasmic chaperone | - |
| KHV91_RS16260 (KHV91_16235) | 3491362..3493692 | + | 2331 | WP_064405637.1 | fimbria/pilus outer membrane usher protein | - |
| KHV91_RS16265 (KHV91_16240) | 3493707..3494666 | + | 960 | WP_042945476.1 | spore coat protein U domain-containing protein | - |
| - | 3494784..3494952 | + | 169 | - | - | Antitoxin |
| - | 3494791..3494894 | - | 104 | - | - | Toxin |
| KHV91_RS16270 (KHV91_16245) | 3495051..3495389 | - | 339 | WP_004103344.1 | YebY family protein | - |
| KHV91_RS16275 (KHV91_16250) | 3495406..3496275 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| KHV91_RS16280 (KHV91_16255) | 3496280..3496654 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| KHV91_RS16285 (KHV91_16260) | 3496790..3497020 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| KHV91_RS16290 (KHV91_16265) | 3497099..3497758 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| KHV91_RS16295 (KHV91_16270) | 3497765..3499825 | - | 2061 | WP_033836507.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202206 NZ_CP074449:c3494894-3494791 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT202206 NZ_CP074449:3494784-3494952 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
