Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1048686..1048830 | Replicon | chromosome |
| Accession | NZ_CP074448 | ||
| Organism | Enterobacter asburiae strain S3_CRE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1048721..1048824 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1048686..1048830 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV90_RS04760 (KHV90_04750) | 1045170..1045832 | - | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
| KHV90_RS04765 (KHV90_04755) | 1045857..1046507 | - | 651 | WP_048979922.1 | carbon-nitrogen hydrolase family protein | - |
| KHV90_RS04770 (KHV90_04760) | 1046618..1046848 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| KHV90_RS04775 (KHV90_04765) | 1046985..1047356 | + | 372 | WP_048979919.1 | CopC domain-containing protein YobA | - |
| KHV90_RS04780 (KHV90_04770) | 1047358..1048227 | + | 870 | WP_048979917.1 | copper homeostasis membrane protein CopD | - |
| KHV90_RS04785 (KHV90_04775) | 1048244..1048582 | + | 339 | WP_033145840.1 | YebY family protein | - |
| - | 1048686..1048830 | - | 145 | - | - | Antitoxin |
| - | 1048721..1048824 | + | 104 | - | - | Toxin |
| KHV90_RS04790 (KHV90_04780) | 1049022..1049918 | - | 897 | WP_048979915.1 | benzoate transporter | - |
| KHV90_RS04795 (KHV90_04785) | 1050092..1051033 | - | 942 | WP_048979909.1 | VirK/YbjX family protein | - |
| KHV90_RS04800 (KHV90_04790) | 1051199..1051843 | + | 645 | WP_048979907.1 | protein-serine/threonine phosphatase | - |
| KHV90_RS04805 (KHV90_04795) | 1051878..1052117 | - | 240 | WP_008500472.1 | YebV family protein | - |
| KHV90_RS04810 (KHV90_04800) | 1052224..1053672 | - | 1449 | WP_197736957.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202188 NZ_CP074448:1048721-1048824 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT202188 NZ_CP074448:c1048830-1048686 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
