Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1976719..1976865 | Replicon | chromosome |
| Accession | NZ_CP074446 | ||
| Organism | Klebsiella aerogenes strain S2_CRE2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1976754..1976857 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1976719..1976865 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV89_RS09240 | 1971828..1973888 | + | 2061 | WP_103826048.1 | oligopeptidase B | - |
| KHV89_RS09245 | 1973891..1974550 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| KHV89_RS09250 | 1974630..1974860 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| KHV89_RS09255 | 1974995..1975369 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| KHV89_RS09260 | 1975373..1976242 | + | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| KHV89_RS09265 | 1976256..1976597 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1976719..1976865 | - | 147 | - | - | Antitoxin |
| - | 1976754..1976857 | + | 104 | - | - | Toxin |
| KHV89_RS09270 | 1976985..1977938 | - | 954 | WP_103826047.1 | spore coat U domain-containing protein | - |
| KHV89_RS09275 | 1977951..1980275 | - | 2325 | WP_103826046.1 | fimbria/pilus outer membrane usher protein | - |
| KHV89_RS09280 | 1980278..1981027 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| KHV89_RS09285 | 1981045..1981563 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202173 NZ_CP074446:1976754-1976857 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT202173 NZ_CP074446:c1976865-1976719 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
