Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2147636..2147781 | Replicon | chromosome |
| Accession | NZ_CP074442 | ||
| Organism | Klebsiella pneumoniae strain S1_CRE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2147672..2147774 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2147636..2147781 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHV88_RS10605 (KHV88_10580) | 2142766..2144826 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| KHV88_RS10610 (KHV88_10585) | 2144830..2145489 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KHV88_RS10615 (KHV88_10590) | 2145568..2145798 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KHV88_RS10620 (KHV88_10595) | 2145911..2146285 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KHV88_RS10625 (KHV88_10600) | 2146289..2147158 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KHV88_RS10630 (KHV88_10605) | 2147175..2147513 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2147636..2147781 | - | 146 | - | - | Antitoxin |
| - | 2147672..2147774 | + | 103 | - | - | Toxin |
| KHV88_RS10635 (KHV88_10610) | 2148149..2148292 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KHV88_RS10640 (KHV88_10615) | 2148397..2149365 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KHV88_RS10645 (KHV88_10620) | 2149522..2150175 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KHV88_RS10650 (KHV88_10625) | 2150172..2150363 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KHV88_RS10655 (KHV88_10630) | 2150461..2150700 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KHV88_RS10660 (KHV88_10635) | 2150816..2152249 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T202156 NZ_CP074442:2147672-2147774 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT202156 NZ_CP074442:c2147781-2147636 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
