Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3251693..3251836 | Replicon | chromosome |
| Accession | NZ_CP074437 | ||
| Organism | Klebsiella sp. A52 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3251728..3251831 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3251693..3251836 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KGA69_RS15330 | 3246802..3248862 | + | 2061 | WP_213292435.1 | oligopeptidase B | - |
| KGA69_RS15335 | 3248865..3249524 | - | 660 | WP_045390333.1 | exodeoxyribonuclease X | - |
| KGA69_RS15340 | 3249604..3249834 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| KGA69_RS15345 | 3249969..3250343 | + | 375 | WP_045390336.1 | CopC domain-containing protein YobA | - |
| KGA69_RS15350 | 3250347..3251216 | + | 870 | WP_045390338.1 | copper homeostasis membrane protein CopD | - |
| KGA69_RS15355 | 3251230..3251571 | + | 342 | WP_072251410.1 | YebY family protein | - |
| - | 3251693..3251836 | - | 144 | - | - | Antitoxin |
| - | 3251728..3251831 | + | 104 | - | - | Toxin |
| KGA69_RS15360 | 3252000..3252950 | - | 951 | WP_049060939.1 | spore coat protein U domain-containing protein | - |
| KGA69_RS15365 | 3252968..3255292 | - | 2325 | WP_213292436.1 | fimbria/pilus outer membrane usher protein | - |
| KGA69_RS15370 | 3255295..3256044 | - | 750 | WP_045390350.1 | molecular chaperone | - |
| KGA69_RS15375 | 3256062..3256580 | - | 519 | WP_213292437.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202142 NZ_CP074437:3251728-3251831 [Klebsiella sp. A52]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT202142 NZ_CP074437:c3251836-3251693 [Klebsiella sp. A52]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGTCAGCTTTTCCAGT
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGTCAGCTTTTCCAGT
