Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 2183433..2183980 | Replicon | chromosome |
| Accession | NZ_CP074415 | ||
| Organism | Vibrio parahaemolyticus strain 64 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A2K7SRN5 |
| Locus tag | J5O00_RS10510 | Protein ID | WP_010448451.1 |
| Coordinates | 2183433..2183735 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U3A269 |
| Locus tag | J5O00_RS10515 | Protein ID | WP_005448240.1 |
| Coordinates | 2183723..2183980 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5O00_RS10485 | 2179869..2180791 | + | 923 | Protein_2070 | IS5-like element ISVa2 family transposase | - |
| J5O00_RS26160 | 2181359..2181424 | - | 66 | Protein_2071 | DUF3265 domain-containing protein | - |
| J5O00_RS10490 | 2181421..2181780 | - | 360 | WP_219079166.1 | hypothetical protein | - |
| J5O00_RS10495 | 2181800..2181892 | - | 93 | Protein_2073 | DUF3265 domain-containing protein | - |
| J5O00_RS10500 | 2182494..2182697 | - | 204 | WP_219079167.1 | hypothetical protein | - |
| J5O00_RS10505 | 2182834..2182959 | - | 126 | WP_079882382.1 | DUF3265 domain-containing protein | - |
| J5O00_RS26165 | 2183359..2183436 | - | 78 | Protein_2076 | DUF3265 domain-containing protein | - |
| J5O00_RS10510 | 2183433..2183735 | - | 303 | WP_010448451.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| J5O00_RS10515 | 2183723..2183980 | - | 258 | WP_005448240.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| J5O00_RS26170 | 2184173..2184415 | - | 243 | WP_257575202.1 | hypothetical protein | - |
| J5O00_RS10525 | 2184740..2185522 | - | 783 | WP_023623900.1 | hypothetical protein | - |
| J5O00_RS10530 | 2185743..2186525 | - | 783 | WP_023623899.1 | hypothetical protein | - |
| J5O00_RS26175 | 2186547..2186669 | - | 123 | WP_079379530.1 | DUF3265 domain-containing protein | - |
| J5O00_RS10535 | 2186941..2187033 | - | 93 | WP_079882431.1 | DUF3265 domain-containing protein | - |
| J5O00_RS26180 | 2187229..2187351 | - | 123 | WP_257575203.1 | hypothetical protein | - |
| J5O00_RS10545 | 2187488..2187928 | - | 441 | WP_021448683.1 | hypothetical protein | - |
| J5O00_RS10550 | 2188540..2188632 | - | 93 | WP_005494807.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2096480..2211362 | 114882 | |
| - | inside | Integron | - | - | 2097514..2209641 | 112127 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11625.52 Da Isoelectric Point: 5.1765
>T202068 WP_010448451.1 NZ_CP074415:c2183735-2183433 [Vibrio parahaemolyticus]
MAEVIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLGKQ
MAEVIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLGKQ
Download Length: 303 bp
>T202068 NZ_CP099306:2080864-2081196 [Klebsiella michiganensis]
ATGGACAGAGGGGAAATCTGGCTCGTTTCACTGGATCCGATTGCAGGCCACGAGCAAAGCGGAAAACGTCCGGTGCTTAT
CGTATCGAAGGCATCGTTTAACAAGCTGACCCGGTTACCCGTTGTTGTTCCCATCACCAGCGGCGGAAATTTTGCTCGCA
CGGCAGGTTTCACCGTTTCACTGGAAGGGGCAGGGATAAAAACGTTGGGCGTTATTCGCTGCGACCAGCCCAGAACCATT
GATATGACTGCCCGGAACGGCAAGCGGCTGGAACGCATACCAGACGCTGTGGTAAATGAAGTGCTTGCCAGGCTGGATGC
AATTTTGAGTTAA
ATGGACAGAGGGGAAATCTGGCTCGTTTCACTGGATCCGATTGCAGGCCACGAGCAAAGCGGAAAACGTCCGGTGCTTAT
CGTATCGAAGGCATCGTTTAACAAGCTGACCCGGTTACCCGTTGTTGTTCCCATCACCAGCGGCGGAAATTTTGCTCGCA
CGGCAGGTTTCACCGTTTCACTGGAAGGGGCAGGGATAAAAACGTTGGGCGTTATTCGCTGCGACCAGCCCAGAACCATT
GATATGACTGCCCGGAACGGCAAGCGGCTGGAACGCATACCAGACGCTGTGGTAAATGAAGTGCTTGCCAGGCTGGATGC
AATTTTGAGTTAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9606.10 Da Isoelectric Point: 6.7269
>AT202068 WP_005448240.1 NZ_CP074415:c2183980-2183723 [Vibrio parahaemolyticus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT202068 NZ_CP099306:2080606-2080863 [Klebsiella michiganensis]
ATGTATACCACTCGCCTGAAAAAGGTCGGCGGATCCATCATGCTGGCGGTTCCTCCCGCCGTGCTCAAAACGCTGGAGCT
GTCGACGGACAGCGAAGTCGGCATGACCATTAATAATGGCTGCCTGATTATTGAACCCCAGAAACGGCCTCATTATTCTC
TTGAGGAGCTGCTGGCGCAGTGCGATCCGCACGCCGAAATGAGCGAAGAGGATCGGGAATGGATTGATGCTCCTGCGGTG
GGCAAGGAGATCCTGTAG
ATGTATACCACTCGCCTGAAAAAGGTCGGCGGATCCATCATGCTGGCGGTTCCTCCCGCCGTGCTCAAAACGCTGGAGCT
GTCGACGGACAGCGAAGTCGGCATGACCATTAATAATGGCTGCCTGATTATTGAACCCCAGAAACGGCCTCATTATTCTC
TTGAGGAGCTGCTGGCGCAGTGCGATCCGCACGCCGAAATGAGCGAAGAGGATCGGGAATGGATTGATGCTCCTGCGGTG
GGCAAGGAGATCCTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2K7SRN5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A432DGX8 |