Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | chpSB/PRK09812-ChpS |
| Location | 5717315..5717913 | Replicon | chromosome |
| Accession | NZ_CP074412 | ||
| Organism | Pseudomonas viridiflava strain U625 | ||
Toxin (Protein)
| Gene name | chpB | Uniprot ID | - |
| Locus tag | KHW14_RS25175 | Protein ID | WP_069145198.1 |
| Coordinates | 5717315..5717662 (-) | Length | 116 a.a. |
Antitoxin (Protein)
| Gene name | chpS | Uniprot ID | - |
| Locus tag | KHW14_RS25180 | Protein ID | WP_122409396.1 |
| Coordinates | 5717659..5717913 (-) | Length | 85 a.a. |
Genomic Context
Location: 5715022..5716017 (996 bp)
Type: Others
Protein ID: WP_043305547.1
Type: Others
Protein ID: WP_043305547.1
Location: 5716038..5717228 (1191 bp)
Type: Others
Protein ID: WP_004880242.1
Type: Others
Protein ID: WP_004880242.1
Location: 5718157..5719839 (1683 bp)
Type: Others
Protein ID: WP_213673986.1
Type: Others
Protein ID: WP_213673986.1
Location: 5719894..5720301 (408 bp)
Type: Others
Protein ID: WP_043305551.1
Type: Others
Protein ID: WP_043305551.1
Location: 5712766..5714763 (1998 bp)
Type: Others
Protein ID: WP_122770408.1
Type: Others
Protein ID: WP_122770408.1
Location: 5717315..5717662 (348 bp)
Type: Toxin
Protein ID: WP_069145198.1
Type: Toxin
Protein ID: WP_069145198.1
Location: 5717659..5717913 (255 bp)
Type: Antitoxin
Protein ID: WP_122409396.1
Type: Antitoxin
Protein ID: WP_122409396.1
Location: 5720637..5721038 (402 bp)
Type: Others
Protein ID: WP_004880251.1
Type: Others
Protein ID: WP_004880251.1
Location: 5721136..5722527 (1392 bp)
Type: Others
Protein ID: WP_043305552.1
Type: Others
Protein ID: WP_043305552.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHW14_RS25160 (KHW14_25160) | 5712766..5714763 | - | 1998 | WP_122770408.1 | transketolase | - |
| KHW14_RS25165 (KHW14_25165) | 5715022..5716017 | + | 996 | WP_043305547.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| KHW14_RS25170 (KHW14_25170) | 5716038..5717228 | + | 1191 | WP_004880242.1 | methionine adenosyltransferase | - |
| KHW14_RS25175 (KHW14_25175) | 5717315..5717662 | - | 348 | WP_069145198.1 | type II toxin-antitoxin system ChpB family toxin | Toxin |
| KHW14_RS25180 (KHW14_25180) | 5717659..5717913 | - | 255 | WP_122409396.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| KHW14_RS25185 (KHW14_25185) | 5718157..5719839 | + | 1683 | WP_213673986.1 | NAD-dependent DNA ligase LigB | - |
| KHW14_RS25190 (KHW14_25190) | 5719894..5720301 | + | 408 | WP_043305551.1 | DUF1090 domain-containing protein | - |
| KHW14_RS25195 (KHW14_25195) | 5720637..5721038 | - | 402 | WP_004880251.1 | MAPEG family protein | - |
| KHW14_RS25200 (KHW14_25200) | 5721136..5722527 | - | 1392 | WP_043305552.1 | heavy metal sensor histidine kinase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 116 a.a. Molecular weight: 12189.88 Da Isoelectric Point: 9.1004
>T202063 WP_069145198.1 NZ_CP074412:c5717662-5717315 [Pseudomonas viridiflava]
VKRPGFNRADIVRINLNPTAGREQQGDFRPALVLTPAAYNVSGLAIVAPITQGGDFARYAGFAVPLSGSGTETQGVVLCN
QIRTVDLQARGAKRIESAPDVVINDALARVQALFE
VKRPGFNRADIVRINLNPTAGREQQGDFRPALVLTPAAYNVSGLAIVAPITQGGDFARYAGFAVPLSGSGTETQGVVLCN
QIRTVDLQARGAKRIESAPDVVINDALARVQALFE
Download Length: 348 bp
>T202063 NZ_CP099304:c4760125-4759868 [Klebsiella michiganensis]
ATGAATCTATCCCGTCAGGAACAACGTACCTTACACGTTCTCGCTAAAGGTGGCCGGATCGCGCACATCCGCGATGCATC
AGGCCGCGTCACCTCTGTTGAATGCTACAGCCGCGAAGGGCTCCTGCTCAGCGACTGTACGCTCGCCGTTTTCAAAAAAC
TCAAAACCAAAAAGCTGATTAAGTCCGTCAACGGACAGCCCTACCGCATCAATACCACCGGGCTGAATAACGTCCGCGCA
CAGCTGGACAATCGCTAA
ATGAATCTATCCCGTCAGGAACAACGTACCTTACACGTTCTCGCTAAAGGTGGCCGGATCGCGCACATCCGCGATGCATC
AGGCCGCGTCACCTCTGTTGAATGCTACAGCCGCGAAGGGCTCCTGCTCAGCGACTGTACGCTCGCCGTTTTCAAAAAAC
TCAAAACCAAAAAGCTGATTAAGTCCGTCAACGGACAGCCCTACCGCATCAATACCACCGGGCTGAATAACGTCCGCGCA
CAGCTGGACAATCGCTAA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9267.69 Da Isoelectric Point: 4.6471
>AT202063 WP_122409396.1 NZ_CP074412:c5717913-5717659 [Pseudomonas viridiflava]
MEVKIQQWGNSAAIRLPANVLKQMSLVSGDVLVLDVSSEVMTLKPAKARLHYQLTDLMAQCDLNASEPEELAGWNTMQPT
GREV
MEVKIQQWGNSAAIRLPANVLKQMSLVSGDVLVLDVSSEVMTLKPAKARLHYQLTDLMAQCDLNASEPEELAGWNTMQPT
GREV
Download Length: 255 bp
>AT202063 NZ_CP099304:c4759857-4759306 [Klebsiella michiganensis]
ATGACAAACCACAGCTTCACTTTTCATGTCACCTCTGAAGGCGATACCGATGACATTCTCGACGTCGAAACCCGGGCTTT
CGGCTACAGCAAAGAGGCCAGGCTGGTGGCCGATTTGCTCAACGATGAGAGCGCCTGCCCGACGTTATCGCTGCTGGCCA
GGCATAACGGAGAGGCGGTTGGGCATATTTTATTCACCCGGGCGACGTTCAAAGGGGAGCCGGACTCGCCGATGATGCAC
ATCCTTGCTCCCCTGACGGTGGTGCCGGAATACCAGGGCGCGGGCGTTGGCGGAGAGCTTATCCGGCACGGCATTGAGCA
GTTGAAAGCAATGGGAAGCCAGGCGGTATTTGTTCTGGGCCACGCCGCTTACTACCCCAGGCACGGGTTTGAGCCAGGCG
CGGGAGATAAAGGCTATCCGGCGCCTTATCCGATTCCCGCGGCGCATAAAGCCTGCTGGATGCTGCAGCCGATTTCGTCT
CAGCCGCTGGGACGAACGGGCCAGATACAGTGCGCCCGGGCGTTAATGAAACCCGAGCACTGGCGCGAGTAA
ATGACAAACCACAGCTTCACTTTTCATGTCACCTCTGAAGGCGATACCGATGACATTCTCGACGTCGAAACCCGGGCTTT
CGGCTACAGCAAAGAGGCCAGGCTGGTGGCCGATTTGCTCAACGATGAGAGCGCCTGCCCGACGTTATCGCTGCTGGCCA
GGCATAACGGAGAGGCGGTTGGGCATATTTTATTCACCCGGGCGACGTTCAAAGGGGAGCCGGACTCGCCGATGATGCAC
ATCCTTGCTCCCCTGACGGTGGTGCCGGAATACCAGGGCGCGGGCGTTGGCGGAGAGCTTATCCGGCACGGCATTGAGCA
GTTGAAAGCAATGGGAAGCCAGGCGGTATTTGTTCTGGGCCACGCCGCTTACTACCCCAGGCACGGGTTTGAGCCAGGCG
CGGGAGATAAAGGCTATCCGGCGCCTTATCCGATTCCCGCGGCGCATAAAGCCTGCTGGATGCTGCAGCCGATTTCGTCT
CAGCCGCTGGGACGAACGGGCCAGATACAGTGCGCCCGGGCGTTAATGAAACCCGAGCACTGGCGCGAGTAA