Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3373802..3374073 | Replicon | chromosome |
| Accession | NZ_CP074407 | ||
| Organism | Escherichia coli strain GDAR2-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3373932..3374035 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3373802..3374073 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHW16_RS16265 | 3370357..3371019 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KHW16_RS16270 | 3371043..3371699 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KHW16_RS16275 | 3371801..3372031 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KHW16_RS16280 | 3372170..3372544 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KHW16_RS16285 | 3372548..3373420 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KHW16_RS16290 | 3373433..3373774 | + | 342 | WP_024243786.1 | YebY family protein | - |
| - | 3373802..3374073 | - | 272 | - | - | Antitoxin |
| - | 3373932..3374035 | + | 104 | - | - | Toxin |
| KHW16_RS16295 | 3374170..3374826 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| KHW16_RS16300 | 3374827..3375018 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KHW16_RS16305 | 3375123..3375359 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KHW16_RS16310 | 3375477..3376916 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T202033 NZ_CP074407:3373932-3374035 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT202033 NZ_CP074407:c3374073-3373802 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
