Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VapB |
| Location | 283096..283676 | Replicon | plasmid pDG3-1g |
| Accession | NZ_CP074400 | ||
| Organism | Agrobacterium salinitolerans strain DG3-1 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | KHC17_RS29850 | Protein ID | WP_149148806.1 |
| Coordinates | 283096..283479 (-) | Length | 128 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | A0A5D9CLR1 |
| Locus tag | KHC17_RS27815 | Protein ID | WP_006699143.1 |
| Coordinates | 283476..283676 (-) | Length | 67 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHC17_RS27780 (KHC17_27780) | 278375..279085 | - | 711 | WP_217005918.1 | GntR family transcriptional regulator | - |
| KHC17_RS27785 (KHC17_27785) | 279372..279890 | + | 519 | Protein_277 | Fic family protein | - |
| KHC17_RS27790 (KHC17_27790) | 280013..280435 | - | 423 | WP_025590992.1 | hypothetical protein | - |
| KHC17_RS27795 (KHC17_27795) | 280425..280685 | - | 261 | WP_025590994.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| KHC17_RS27800 (KHC17_27800) | 280853..281566 | - | 714 | WP_217005920.1 | IS6 family transposase | - |
| KHC17_RS27805 (KHC17_27805) | 281731..281979 | + | 249 | WP_254229234.1 | hypothetical protein | - |
| KHC17_RS27810 (KHC17_27810) | 282198..282629 | - | 432 | WP_217005922.1 | type II toxin-antitoxin system VapC family toxin | - |
| KHC17_RS29845 | 282629..282928 | - | 300 | WP_254229235.1 | hypothetical protein | - |
| KHC17_RS29850 | 283096..283479 | - | 384 | WP_149148806.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| KHC17_RS27815 (KHC17_27815) | 283476..283676 | - | 201 | WP_006699143.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
| KHC17_RS27820 (KHC17_27820) | 283872..284411 | - | 540 | WP_254229236.1 | hypothetical protein | - |
| KHC17_RS27825 (KHC17_27825) | 284708..285814 | + | 1107 | WP_217005924.1 | Fic family protein | - |
| KHC17_RS27830 (KHC17_27830) | 285969..286683 | + | 715 | Protein_288 | IS6 family transposase | - |
| KHC17_RS27835 (KHC17_27835) | 286830..287024 | + | 195 | WP_149148803.1 | hypothetical protein | - |
| KHC17_RS27840 (KHC17_27840) | 287021..288358 | - | 1338 | WP_254229237.1 | MATE family efflux transporter | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | htpB / htpB | 1..521982 | 521982 | |
| - | inside | IScluster/Tn | - | - | 280853..286683 | 5830 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 128 a.a. Molecular weight: 14160.30 Da Isoelectric Point: 6.6943
>T202016 WP_149148806.1 NZ_CP074400:c283479-283096 [Agrobacterium salinitolerans]
VILVDSSIWIDHFRHVDPELVKIIEDDQLLCHPFVVGELALGSLRERDAVLAFLTAQREAVVATHAEVMTVIDRHSIFSM
GIGYTDAHLLTSTLLDRRSSLWTRDKRLAAAARKVGAALYPSPHTPH
VILVDSSIWIDHFRHVDPELVKIIEDDQLLCHPFVVGELALGSLRERDAVLAFLTAQREAVVATHAEVMTVIDRHSIFSM
GIGYTDAHLLTSTLLDRRSSLWTRDKRLAAAARKVGAALYPSPHTPH
Download Length: 384 bp
>T202016 NZ_CP099260:4014932-4015150 [Klebsiella aerogenes]
ATGTCTGGTAAACCATTAACTAAAACAGACTATTTGATGCGTTTACGCCGCTGTCAGACAATTGATACGCTGGAGCGCGT
AATTGAAAAGAATAAATATGAACTTTCCGACAATGAATTGGCGGTATTTTACTCAGCAGCCGACCATCGTCTTGCTGAAT
TGACCATGAATAAGCTATACGACAAAATCCCAACTTCAGTATGGAAATTTATCCGCTAG
ATGTCTGGTAAACCATTAACTAAAACAGACTATTTGATGCGTTTACGCCGCTGTCAGACAATTGATACGCTGGAGCGCGT
AATTGAAAAGAATAAATATGAACTTTCCGACAATGAATTGGCGGTATTTTACTCAGCAGCCGACCATCGTCTTGCTGAAT
TGACCATGAATAAGCTATACGACAAAATCCCAACTTCAGTATGGAAATTTATCCGCTAG
Antitoxin
Download Length: 67 a.a. Molecular weight: 7168.28 Da Isoelectric Point: 10.7407
>AT202016 WP_006699143.1 NZ_CP074400:c283676-283476 [Agrobacterium salinitolerans]
MRSTINLDDSLMERAKSLTGTKETAALVRQALETLVRVESGKRLIALGGTMPEAEAAPRRRSEVGK
MRSTINLDDSLMERAKSLTGTKETAALVRQALETLVRVESGKRLIALGGTMPEAEAAPRRRSEVGK
Download Length: 201 bp
>AT202016 NZ_CP099260:4014531-4014905 [Klebsiella aerogenes]
ATGGACGAGTACTCGCCAAAAAGACATGATATCGCGCAGCTAAGATTTCTCTGCGAAACGTTGTATCATGACTGCCTTGC
AAACCTGGAAGAAAGCAACCGCGGCTGGGTTAACGATCCCACCTCGGCGGTGAATCTTCAATTAAATGAATTGATCGAGC
ACATAGCAACTTACGCGCTTAATTATAAAATTAAGTACGCTGAGGATAATAAGCTGATTTCTCAGCTTGACGAATACCTG
GATGACACTTTTATGCTGTTCAGTAGCTATGGCATAAACACAAGCGATCTCCAAAAATGGCGCAAATCCGGCAATCGGTT
ATTCCGATGCTTTGTGAACGCCAGCCGGGAGAACCCGGCAAGTCTTTCTTGTTAG
ATGGACGAGTACTCGCCAAAAAGACATGATATCGCGCAGCTAAGATTTCTCTGCGAAACGTTGTATCATGACTGCCTTGC
AAACCTGGAAGAAAGCAACCGCGGCTGGGTTAACGATCCCACCTCGGCGGTGAATCTTCAATTAAATGAATTGATCGAGC
ACATAGCAACTTACGCGCTTAATTATAAAATTAAGTACGCTGAGGATAATAAGCTGATTTCTCAGCTTGACGAATACCTG
GATGACACTTTTATGCTGTTCAGTAGCTATGGCATAAACACAAGCGATCTCCAAAAATGGCGCAAATCCGGCAATCGGTT
ATTCCGATGCTTTGTGAACGCCAGCCGGGAGAACCCGGCAAGTCTTTCTTGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|