Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055399..2055670 | Replicon | chromosome |
| Accession | NZ_CP074366 | ||
| Organism | Escherichia coli strain ZYB62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2055529..2055632 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055399..2055670 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KG092_RS09845 | 2051954..2052616 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KG092_RS09850 | 2052640..2053296 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KG092_RS09855 | 2053398..2053628 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KG092_RS09860 | 2053767..2054141 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KG092_RS09865 | 2054145..2055017 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| KG092_RS09870 | 2055030..2055371 | + | 342 | WP_077781846.1 | YebY family protein | - |
| - | 2055399..2055670 | - | 272 | - | - | Antitoxin |
| - | 2055529..2055632 | + | 104 | - | - | Toxin |
| KG092_RS09875 | 2055767..2056423 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KG092_RS09880 | 2056424..2056615 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KG092_RS09885 | 2056720..2056956 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KG092_RS09890 | 2057074..2058513 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201970 NZ_CP074366:2055529-2055632 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201970 NZ_CP074366:c2055670-2055399 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
