Detailed information of TA system TA201958

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): omega-epsilon-zeta/-
• Location: 534627..535230
• Replicon: chromosome
• Accession: NZ_CP074365
• Organism: Xanthomonas translucens strain CFBP 8304

Toxin (Protein)

• Gene name: avrRxo1
• Uniprot ID: -
• Locus tag: KCU57_RS02345
• Protein ID: WP_237650150.1
• Coordinates: 534937..535230 (-)
• Length: 98 a.a.

Antitoxin (Protein)

• Gene name: arc1
• Uniprot ID: -
• Locus tag: KCU57_RS02340
• Protein ID: WP_237650149.1
• Coordinates: 534627..534923 (-)
• Length: 99 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
KCU57_RS02315 (KCU57_02310)	530502..531416	-	915	WP_003465336.1	YihY/virulence factor BrkB family protein	-
KCU57_RS02320 (KCU57_02315)	531550..531981	-	432	WP_237650147.1	GatB/YqeY domain-containing protein	-
KCU57_RS02325 (KCU57_02320)	532267..532482	-	216	WP_003465342.1	30S ribosomal protein S21	-
KCU57_RS02330 (KCU57_02325)	532604..533752	+	1149	WP_237650148.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
KCU57_RS02335 (KCU57_02330)	533745..534098	+	354	WP_003480645.1	dihydroneopterin aldolase	-
KCU57_RS02340 (KCU57_02335)	534627..534923	-	297	WP_237650149.1	hypothetical protein	Antitoxin
KCU57_RS02345 (KCU57_02340)	534937..535230	-	294	WP_237650150.1	hypothetical protein	Toxin
KCU57_RS02350 (KCU57_02345)	535309..536115	+	807	WP_237648987.1	IS5 family transposase	-
KCU57_RS02355 (KCU57_02350)	536081..537052	-	972	WP_237650151.1	XopAJ/AvrRxo1 family type III secretion system effector zeta toxin	-
KCU57_RS02360 (KCU57_02355)	537352..538800	+	1449	WP_003480648.1	circularly permuted type 2 ATP-grasp protein	-
KCU57_RS02365 (KCU57_02360)	538800..539741	+	942	WP_003465367.1	alpha-E domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	flank	IS/Tn	-	-	535309..536115	806

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 98 a.a.
• Molecular weight: 10471.66 Da
• Isoelectric Point: 4.4843

>T201958 WP_237650150.1 NZ_CP074365:c535230-534937 [Xanthomonas translucens]
MGSYRLFGTNEKGEKVMVASVADGELSIHDPQLYESITAPEDFNSGDKGEQVIDTALIDRLSNSIDDPKRATDARAALEK
CKGMTWSNALAAHSSLI

Nucleotide

• Length: 294 bp

>T201958 NZ_CP099140:3965100-3965318 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin

Protein

• Length: 99 a.a.
• Molecular weight: 11086.57 Da
• Isoelectric Point: 7.3576

>AT201958 WP_237650149.1 NZ_CP074365:c534923-534627 [Xanthomonas translucens]
MTHLKGADALALHKKLKERNAALRSAELDSAKALAHESGKERFNLEKLESICDTTQAGRITDPNDRQAIYEQMYYVEHPK
ISTLQEFARIVVTISSWS

Nucleotide

• Length: 297 bp

>AT201958 NZ_CP099140:3964699-3965073 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG