Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/-
Location 534627..535230 Replicon chromosome
Accession NZ_CP074365
Organism Xanthomonas translucens strain CFBP 8304

Toxin (Protein)


Gene name avrRxo1 Uniprot ID -
Locus tag KCU57_RS02345 Protein ID WP_237650150.1
Coordinates 534937..535230 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name arc1 Uniprot ID -
Locus tag KCU57_RS02340 Protein ID WP_237650149.1
Coordinates 534627..534923 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KCU57_RS02315 (KCU57_02310) 530502..531416 - 915 WP_003465336.1 YihY/virulence factor BrkB family protein -
KCU57_RS02320 (KCU57_02315) 531550..531981 - 432 WP_237650147.1 GatB/YqeY domain-containing protein -
KCU57_RS02325 (KCU57_02320) 532267..532482 - 216 WP_003465342.1 30S ribosomal protein S21 -
KCU57_RS02330 (KCU57_02325) 532604..533752 + 1149 WP_237650148.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
KCU57_RS02335 (KCU57_02330) 533745..534098 + 354 WP_003480645.1 dihydroneopterin aldolase -
KCU57_RS02340 (KCU57_02335) 534627..534923 - 297 WP_237650149.1 hypothetical protein Antitoxin
KCU57_RS02345 (KCU57_02340) 534937..535230 - 294 WP_237650150.1 hypothetical protein Toxin
KCU57_RS02350 (KCU57_02345) 535309..536115 + 807 WP_237648987.1 IS5 family transposase -
KCU57_RS02355 (KCU57_02350) 536081..537052 - 972 WP_237650151.1 XopAJ/AvrRxo1 family type III secretion system effector zeta toxin -
KCU57_RS02360 (KCU57_02355) 537352..538800 + 1449 WP_003480648.1 circularly permuted type 2 ATP-grasp protein -
KCU57_RS02365 (KCU57_02360) 538800..539741 + 942 WP_003465367.1 alpha-E domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 535309..536115 806


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10471.66 Da        Isoelectric Point: 4.4843

>T201958 WP_237650150.1 NZ_CP074365:c535230-534937 [Xanthomonas translucens]
MGSYRLFGTNEKGEKVMVASVADGELSIHDPQLYESITAPEDFNSGDKGEQVIDTALIDRLSNSIDDPKRATDARAALEK
CKGMTWSNALAAHSSLI

Download         Length: 294 bp

>T201958 NZ_CP099140:3965100-3965318 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11086.57 Da        Isoelectric Point: 7.3576

>AT201958 WP_237650149.1 NZ_CP074365:c534923-534627 [Xanthomonas translucens]
MTHLKGADALALHKKLKERNAALRSAELDSAKALAHESGKERFNLEKLESICDTTQAGRITDPNDRQAIYEQMYYVEHPK
ISTLQEFARIVVTISSWS

Download         Length: 297 bp

>AT201958 NZ_CP099140:3964699-3965073 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References