Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 3395724..3396229 Replicon chromosome
Accession NZ_CP074364
Organism Xanthomonas translucens pv. cerealis strain CFBP 2541

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag KHA79_RS14760 Protein ID WP_039007339.1
Coordinates 3395972..3396229 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag KHA79_RS14755 Protein ID WP_039007337.1
Coordinates 3395724..3395975 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KHA79_RS14730 (KHA79_14635) 3390744..3393194 + 2451 WP_080763442.1 DEAD/DEAH box helicase family protein -
KHA79_RS14735 (KHA79_14640) 3393350..3393472 - 123 WP_235426527.1 hypothetical protein -
KHA79_RS14740 (KHA79_14645) 3393521..3393964 - 444 WP_039007331.1 nuclear transport factor 2 family protein -
KHA79_RS14745 (KHA79_14650) 3394085..3394807 + 723 WP_039007333.1 helix-turn-helix transcriptional regulator -
KHA79_RS14750 (KHA79_14655) 3394804..3395568 - 765 WP_039007335.1 DNA-formamidopyrimidine glycosylase family protein -
KHA79_RS14755 (KHA79_14660) 3395724..3395975 + 252 WP_039007337.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
KHA79_RS14760 (KHA79_14665) 3395972..3396229 + 258 WP_039007339.1 Txe/YoeB family addiction module toxin Toxin
KHA79_RS14770 (KHA79_14675) 3396515..3396868 - 354 WP_039007341.1 PilZ domain-containing protein -
KHA79_RS14775 (KHA79_14680) 3396865..3397842 - 978 WP_039007342.1 DNA polymerase III subunit delta' -
KHA79_RS14780 (KHA79_14685) 3397839..3398507 - 669 WP_039007344.1 dTMP kinase -
KHA79_RS14785 (KHA79_14690) 3398504..3399571 - 1068 WP_176717134.1 endolytic transglycosylase MltG -
KHA79_RS14790 (KHA79_14695) 3399641..3400990 - 1350 WP_039007346.1 aminodeoxychorismate synthase component I -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10111.57 Da        Isoelectric Point: 9.3759

>T201956 WP_039007339.1 NZ_CP074364:3395972-3396229 [Xanthomonas translucens pv. cerealis]
VTVQFSDNAWEDDLYWQQTDKKMLKRINDLIKAIQRDPFQGVGKPEPLRHALAGYWSRRINDEHRIVYKVEAGVLLIAQV
RYHYV

Download         Length: 258 bp

>T201956 NZ_CP099140:c2625590-2624268 [Klebsiella pneumoniae]
ATGGCGACGCTTACCACCTGGATGAACAATGTGCGCGTGGGAACCTTAACCCGCCAGGCTAACGGGGCGCACAGTTTTCG
CTATGACGAAGAGTGGCTGCGCAGCCCGCGCGCCAGACCGCTCTCCCTCTCACTGCCGCTGCAGTATGGCAATATCACTG
CCGACGCGGTGTATCACTATTTTGATAACCTGCTGCCCGACAGCCCGCAGGTCCGCGACCGGATCGTCAGGCGCTATCAG
GCGCGCTCGAAGCAGCCGTTCGATCTGCTGGCCGAAGTCGGGCGGGATAGCGTAGGGGCGGTGACCCTCCTGCCGCCGGG
GGAAGAGGCGCACCTGGAAGGATTACGCTGGCAGACGCTGGACGAGGCGCAGCTCACCGCTTTGCTGACCGCTTACCAGT
CGGATATCCCCCTCGGGATGATTACCAGCCAGGACGATTTCCGTATCTCGGTGGCCGGCGCCCAGGAGAAAACGGCGCTG
CTGCGGATGGGCGAGCAGTGGTGTATTCCGCAGGGCGCCACGCCGACCACGCATATCATTAAGCTGCCCATCGGCGAGAT
AAAGCAGCCCAATGCGACGCTGGATCTGCGCGAAAGCGTGGATAATGAGTATCTGTGCCTGGCGCTGGCCAGAGAACTGG
GCCTGGCGGTGCCGGAAGCGGAGATCATCGCCACCCCGCGGATCCGCGCCCTGGCGGTAACCCGCTTCGACCGGCGCTGG
GCGCAGGAGGGACGGGTGCTGCTGCGTCTGCCGCAGGAGGATCTGTGTCAGGCTTTTGGTCTTCCTTCAGCGATGAAATA
TGAGTCTGACGGCGGGCCGGGTATCGCCGCGATCATGACCTTTCTGCTGGGCTCGAGTGAAGCGCTGAAAGATCGCTATG
ACTTTATGAAGTTCATGGTCTTCCAGTGGCTGACGGGGGCGACGGACGGTCACGCAAAAAACTTCTCAATTTACCTGTTG
CCCGGTGGCAGCTACCGCTTAACACCGTTCTACGACGTTATTTCGGCGTTTCCGGTGCTGGGCGGCACGGGACTGCATCT
GCGCGATCTGAAGCTGTCGATGGGGCTCAATGCCACAAAAGGGCGTAAAACAGAGATTAACGCCATCTATCCGCGTCATT
TTCTGGCGACGGCCAAAGCGGTGAACTTTCCCCGGGAGCAGATGCTGGCGATCCTCCAGGAGTTTGCCGGGCATGTGCCG
CAGGCAATCGAAAGCGCTCGCCGGACGCTGCCGGCGGACTTTTCCAGCCACGTCTGGCAGGCCATTACAGAGAACATGCT
GAAGCTGCACGCCCGCCTGCAGCAAGGGCTGCAGGCGCTATAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9297.56 Da        Isoelectric Point: 5.1186

>AT201956 WP_039007337.1 NZ_CP074364:3395724-3395975 [Xanthomonas translucens pv. cerealis]
MDTITYSAARAALADTMERVVNNHEPVIITRSREQSVVMLSLEDYKAMEETSYLLRSPKSAQRLLESIAQLEAGRGKARD
LAE

Download         Length: 252 bp

>AT201956 NZ_CP099140:c2625856-2625590 [Klebsiella pneumoniae]
ATGAATTCCCCGCAGATATACAGTCCCGTGCAGCTGGCCAATTACCTGAAGCTGCTGCGCCAGCAGAATCACTGGACCCA
GGATGCGCTGGCCAGGCGGATCGGCATTAAGCAGGCGACACTGTCCAATTTTGAAAATCACCCCGACAAAACCACCTTAA
CCACGCTGTTTAAGATCCTCCAGTCGCTGGGGGTGGTGATGACGCTGAACGCCAAAGCTGCTGAGACGGCGCCGGCTCCC
GATAACAACACGGACCTTGACTGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References