Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974449..1974720 | Replicon | chromosome |
| Accession | NZ_CP074359 | ||
| Organism | Escherichia coli strain XJ6.2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974579..1974682 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974449..1974720 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFQ22_RS09465 | 1971004..1971666 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFQ22_RS09470 | 1971690..1972346 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFQ22_RS09475 | 1972448..1972678 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFQ22_RS09480 | 1972817..1973191 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| KFQ22_RS09485 | 1973195..1974067 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| KFQ22_RS09490 | 1974080..1974421 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1974449..1974720 | - | 272 | - | - | Antitoxin |
| - | 1974579..1974682 | + | 104 | - | - | Toxin |
| KFQ22_RS09495 | 1974817..1975473 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KFQ22_RS09500 | 1975474..1975665 | - | 192 | WP_000457842.1 | YebW family protein | - |
| KFQ22_RS09505 | 1975770..1976006 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFQ22_RS09510 | 1976124..1977563 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201930 NZ_CP074359:1974579-1974682 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201930 NZ_CP074359:c1974720-1974449 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
