Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070891..2071159 | Replicon | chromosome |
| Accession | NZ_CP074356 | ||
| Organism | Escherichia coli strain XJ6.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071018..2071121 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070891..2071159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFQ18_RS09930 | 2067444..2068106 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFQ18_RS09935 | 2068130..2068786 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFQ18_RS09940 | 2068888..2069118 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFQ18_RS09945 | 2069257..2069631 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| KFQ18_RS09950 | 2069635..2070507 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| KFQ18_RS09955 | 2070520..2070861 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2070891..2071159 | - | 269 | - | - | Antitoxin |
| - | 2071018..2071121 | + | 104 | - | - | Toxin |
| KFQ18_RS09960 | 2071256..2071912 | + | 657 | WP_112066667.1 | protein-serine/threonine phosphatase | - |
| KFQ18_RS09965 | 2071913..2072104 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFQ18_RS09970 | 2072209..2072445 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFQ18_RS09975 | 2072563..2074002 | - | 1440 | WP_032352411.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201896 NZ_CP074356:2071018-2071121 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT201896 NZ_CP074356:c2071159-2070891 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCATCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCATCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
