Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966315..1966586 | Replicon | chromosome |
| Accession | NZ_CP074354 | ||
| Organism | Escherichia coli strain XJ5.2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966445..1966548 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966315..1966586 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFQ11_RS09775 | 1962870..1963532 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFQ11_RS09780 | 1963556..1964212 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFQ11_RS09785 | 1964314..1964544 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFQ11_RS09790 | 1964683..1965057 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| KFQ11_RS09795 | 1965061..1965933 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KFQ11_RS09800 | 1965946..1966287 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1966315..1966586 | - | 272 | - | - | Antitoxin |
| - | 1966445..1966548 | + | 104 | - | - | Toxin |
| KFQ11_RS09805 | 1966683..1967339 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| KFQ11_RS09810 | 1967340..1967531 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFQ11_RS09815 | 1967636..1967872 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFQ11_RS09820 | 1967990..1969429 | - | 1440 | WP_040062830.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201873 NZ_CP074354:1966445-1966548 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT201873 NZ_CP074354:c1966586-1966315 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
