Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2394321..2394462 | Replicon | chromosome |
| Accession | NZ_CP074352 | ||
| Organism | Siccibacter colletis strain YSD YN2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2394324..2394426 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2394321..2394462 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ77_RS11605 (KFZ77_11585) | 2390378..2392957 | + | 2580 | WP_264384275.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| KFZ77_RS11610 (KFZ77_11590) | 2392914..2394246 | + | 1333 | Protein_2276 | recombinase RecT | - |
| - | 2394321..2394462 | + | 142 | - | - | Antitoxin |
| - | 2394324..2394426 | - | 103 | - | - | Toxin |
| KFZ77_RS11615 (KFZ77_11600) | 2394560..2394904 | - | 345 | WP_031521244.1 | YebY family protein | - |
| KFZ77_RS11620 (KFZ77_11605) | 2394932..2395798 | - | 867 | WP_264384276.1 | copper homeostasis membrane protein CopD | - |
| KFZ77_RS11625 (KFZ77_11610) | 2395798..2396172 | - | 375 | WP_264384277.1 | CopC domain-containing protein YobA | - |
| KFZ77_RS11630 (KFZ77_11615) | 2396299..2396529 | + | 231 | WP_264384278.1 | DNA polymerase III subunit theta | - |
| KFZ77_RS11635 (KFZ77_11620) | 2396589..2397251 | + | 663 | WP_264384279.1 | exodeoxyribonuclease X | - |
| KFZ77_RS11640 (KFZ77_11625) | 2397252..2399312 | - | 2061 | WP_264384280.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2377346..2415465 | 38119 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T201858 NZ_CP074352:c2394426-2394324 [Siccibacter colletis]
GCAAGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCCATCCCAGGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTTTTTTT
GCAAGGCGACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCCATCCCAGGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTTTTTTT
Antitoxin
Download Length: 142 bp
>AT201858 NZ_CP074352:2394321-2394462 [Siccibacter colletis]
GATAAAAAAAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCCTGGGATGGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTTAGTCGCCTTGCACTTTAAGAATAGATGACGACGTCAGGTTTTCCAGT
GATAAAAAAAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCCTGGGATGGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTTAGTCGCCTTGCACTTTAAGAATAGATGACGACGTCAGGTTTTCCAGT
