Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008557..2008675 | Replicon | chromosome |
| Accession | NZ_CP074347 | ||
| Organism | Serratia entomophila strain 626 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008579..2008675 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008557..2008675 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFQ06_RS09535 (KFQ06_09545) | 2003921..2005213 | + | 1293 | WP_234590576.1 | SLC13 family permease | - |
| KFQ06_RS09540 (KFQ06_09550) | 2005329..2005559 | - | 231 | WP_234590577.1 | DNA polymerase III subunit theta | - |
| KFQ06_RS09545 (KFQ06_09555) | 2005924..2006442 | + | 519 | WP_234590578.1 | non-heme ferritin | - |
| KFQ06_RS09550 (KFQ06_09560) | 2006770..2007153 | + | 384 | WP_252961756.1 | CopC domain-containing protein YobA | - |
| KFQ06_RS09555 (KFQ06_09565) | 2007157..2008038 | + | 882 | WP_252961757.1 | copper homeostasis membrane protein CopD | - |
| KFQ06_RS09560 (KFQ06_09570) | 2008108..2008449 | + | 342 | WP_234590581.1 | YebY family protein | - |
| - | 2008557..2008675 | - | 119 | - | - | Antitoxin |
| - | 2008579..2008675 | + | 97 | - | - | Toxin |
| KFQ06_RS09565 (KFQ06_09575) | 2008935..2009171 | + | 237 | WP_234590608.1 | cell envelope integrity protein TolA | - |
| KFQ06_RS09570 (KFQ06_09580) | 2009540..2011819 | + | 2280 | WP_252961758.1 | hypothetical protein | - |
| KFQ06_RS09575 (KFQ06_09585) | 2012270..2012920 | + | 651 | WP_234590611.1 | metal-binding protein ZinT | - |
| KFQ06_RS09580 (KFQ06_09590) | 2013268..2013540 | - | 273 | WP_252961759.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2001040..2011819 | 10779 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T201824 NZ_CP074347:2008579-2008675 [Serratia entomophila]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT201824 NZ_CP074347:c2008675-2008557 [Serratia entomophila]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
