Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1860939..1861087 | Replicon | chromosome |
| Accession | NZ_CP074233 | ||
| Organism | Salmonella bongori CFSAN000510 strain SGSC 3100 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1860977..1861080 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1860939..1861087 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYN33_RS08830 | 1857371..1858060 | - | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
| JYN33_RS08835 | 1858084..1858740 | - | 657 | WP_000100264.1 | carbon-nitrogen hydrolase family protein | - |
| JYN33_RS08840 | 1858848..1859078 | - | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| JYN33_RS08845 | 1859216..1859590 | + | 375 | WP_000885911.1 | CopC domain-containing protein YobA | - |
| JYN33_RS08850 | 1859591..1860466 | + | 876 | WP_000979682.1 | copper homeostasis membrane protein CopD | - |
| JYN33_RS08855 | 1860483..1860833 | + | 351 | WP_000746718.1 | YebY family protein | - |
| - | 1860939..1861087 | - | 149 | - | - | Antitoxin |
| - | 1860977..1861080 | + | 104 | - | - | Toxin |
| JYN33_RS08860 | 1861365..1862507 | - | 1143 | WP_000227846.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| JYN33_RS08865 | 1863099..1863575 | - | 477 | WP_000076084.1 | hypothetical protein | - |
| JYN33_RS08870 | 1864201..1864923 | + | 723 | WP_001124232.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
| JYN33_RS21055 | 1865210..1865374 | + | 165 | WP_001134587.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T201807 NZ_CP074233:1860977-1861080 [Salmonella bongori CFSAN000510]
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT201807 NZ_CP074233:c1861087-1860939 [Salmonella bongori CFSAN000510]
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
